Subject
This advanced Viash course enhances your skills in parameterization, templating, and workflow composition, and teaches integration with the Nextflow scientific computing workflow management system.
Target Audience
- Computational Researchers
- Bioinformaticians
- IT Developers
Location
Online
Course Overview
Module 1: Advanced Concepts in Data Pipeline Architecture
- Review of Pipeline Fundamentals
- Complex Pipeline Architectures
Module 2: Deep Dive into Viash Functionality
- Advanced Features of Viash
- Custom Components and Modularity
Module 3: Integrating Diverse Data Types and Sources
- Handling Heterogeneous Data
- Data Source Integration
Module 4: Pipeline Optimization and Performance Tuning
- Performance Analysis
- Optimization Techniques
Module 5: Automation and Continuous Integration/Continuous Deployment (CI/CD)
- Automating Pipeline Processes
- Implementing CI/CD in Pipeline Development
Module 6: Case Studies and Real-World Applications
- Complex Use Cases
- Industry and Research Application
Objectives
- Advance participants’ understanding and skills in complex data pipeline development.
- Provide deep insights into the optimization and management of high-performance pipelines in bioinformatics.
- Equip participants with the ability to integrate advanced tools and techniques into their pipeline development processes.
Required skills
- A solid foundation in data pipeline development with Viash and a good understanding of bioinformatics, data analysis, and scripting languages. Prior experience with pipeline development with Viash, is highly recommended.
Conclusion
Participants of the “Advanced Data Pipeline Development” course will emerge with a profound expertise in creating, optimizing, and managing sophisticated data pipelines. They will gain practical knowledge in handling complex data types, integrating advanced features, and implementing automation and CI/CD in pipeline workflows. This course is aimed at empowering professionals to tackle the most challenging aspects of data pipeline development in the evolving field of bioinformatics and biotechnological research.
Trainers
- Robrecht Cannoodt
- Toni Verbeiren
Program
-
- - Online
500,00 € taxes excluded
- Our general terms and conditions apply to all contracts and courses.